The complete mitochondrial genome of the longneck croaker, pseudotolithus typus Bleeker, 1863 from Sierra Leone

Yeongju Jang; Ah Ran Kim; Muhammad Hilman Fu’adil Amin; Sapto Andriyono; J. Adonis Zuweh; Hyun Woo Kim

doi:10.1080/23802359.2021.1927218

The complete mitochondrial genome of the longneck croaker, pseudotolithus typus Bleeker, 1863 from Sierra Leone

Yeongju Jang, Ah Ran Kim, Muhammad Hilman Fu’adil Amin, Sapto Andriyono, J. Adonis Zuweh, Hyun Woo Kim

Research output: Contribution to journal › Article › peer-review

Abstract

The complete mitochondrial DNA information of Pseudotolithus typus Bleeker, 1863, collected from Sierra Leone was determined using next-generation sequencing (NGS) and bioinfromatic analysis. Its mitogenome (16,504 bp) encoded the typical 13 protein-coding genes (PCGs), 2 ribosomal RNAs (12S & 16S), and 22 tRNAs. All 13 PCGs showed a standard start codon (ATG) but an unusual stop codon (AGA) was identified in COX1 gene. Except for ND6, all 12 PCGs were encoded on the light strand. Except for tRNA^Ser-GCT, 21 tRNAs formed the typical clover-leaf structures. Phylogenetic analysis showed three mitochondrial genomes in the genus Pseudotolithus formed a clade distinct from the other species in the same family. The mitogenome of P. typus identified in this study exhibited 96.27% and 88.86% identity to T. typus in the Guinean water and P. elongatus, respectively. Additional mitogenome sequences of Pseudotolithus species will provide useful information for their scientific management in western African countries.

Original language	English
Pages (from-to)	1640-1641
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	6
Issue number	5
DOIs	https://doi.org/10.1080/23802359.2021.1927218
Publication status	Published - 2021

Keywords

longneck croaker
Mitogenome
Pseudotolithus typus
Sciaenidae
Sierra Leone

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.1080/23802359.2021.1927218

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title = "The complete mitochondrial genome of the longneck croaker, pseudotolithus typus Bleeker, 1863 from Sierra Leone",

abstract = "The complete mitochondrial DNA information of Pseudotolithus typus Bleeker, 1863, collected from Sierra Leone was determined using next-generation sequencing (NGS) and bioinfromatic analysis. Its mitogenome (16,504 bp) encoded the typical 13 protein-coding genes (PCGs), 2 ribosomal RNAs (12S & 16S), and 22 tRNAs. All 13 PCGs showed a standard start codon (ATG) but an unusual stop codon (AGA) was identified in COX1 gene. Except for ND6, all 12 PCGs were encoded on the light strand. Except for tRNASer-GCT, 21 tRNAs formed the typical clover-leaf structures. Phylogenetic analysis showed three mitochondrial genomes in the genus Pseudotolithus formed a clade distinct from the other species in the same family. The mitogenome of P. typus identified in this study exhibited 96.27% and 88.86% identity to T. typus in the Guinean water and P. elongatus, respectively. Additional mitogenome sequences of Pseudotolithus species will provide useful information for their scientific management in western African countries.",

keywords = "longneck croaker, Mitogenome, Pseudotolithus typus, Sciaenidae, Sierra Leone",

author = "Yeongju Jang and Kim, {Ah Ran} and {Fu{\textquoteright}adil Amin}, {Muhammad Hilman} and Sapto Andriyono and Zuweh, {J. Adonis} and Kim, {Hyun Woo}",

note = "Funding Information: This research was supported by the ?Ecosystem Structure and Function of Marine Protected Area (MPA) in Antarctica? project (PM20060), funded by the Ministry of Oceans and Fisheries (20170336), Korea. Publisher Copyright: {\textcopyright} 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.",

year = "2021",

doi = "10.1080/23802359.2021.1927218",

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AU - Jang, Yeongju

AU - Kim, Ah Ran

AU - Fu’adil Amin, Muhammad Hilman

AU - Andriyono, Sapto

AU - Zuweh, J. Adonis

AU - Kim, Hyun Woo

N1 - Funding Information: This research was supported by the ?Ecosystem Structure and Function of Marine Protected Area (MPA) in Antarctica? project (PM20060), funded by the Ministry of Oceans and Fisheries (20170336), Korea. Publisher Copyright: © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

PY - 2021

Y1 - 2021

N2 - The complete mitochondrial DNA information of Pseudotolithus typus Bleeker, 1863, collected from Sierra Leone was determined using next-generation sequencing (NGS) and bioinfromatic analysis. Its mitogenome (16,504 bp) encoded the typical 13 protein-coding genes (PCGs), 2 ribosomal RNAs (12S & 16S), and 22 tRNAs. All 13 PCGs showed a standard start codon (ATG) but an unusual stop codon (AGA) was identified in COX1 gene. Except for ND6, all 12 PCGs were encoded on the light strand. Except for tRNASer-GCT, 21 tRNAs formed the typical clover-leaf structures. Phylogenetic analysis showed three mitochondrial genomes in the genus Pseudotolithus formed a clade distinct from the other species in the same family. The mitogenome of P. typus identified in this study exhibited 96.27% and 88.86% identity to T. typus in the Guinean water and P. elongatus, respectively. Additional mitogenome sequences of Pseudotolithus species will provide useful information for their scientific management in western African countries.

AB - The complete mitochondrial DNA information of Pseudotolithus typus Bleeker, 1863, collected from Sierra Leone was determined using next-generation sequencing (NGS) and bioinfromatic analysis. Its mitogenome (16,504 bp) encoded the typical 13 protein-coding genes (PCGs), 2 ribosomal RNAs (12S & 16S), and 22 tRNAs. All 13 PCGs showed a standard start codon (ATG) but an unusual stop codon (AGA) was identified in COX1 gene. Except for ND6, all 12 PCGs were encoded on the light strand. Except for tRNASer-GCT, 21 tRNAs formed the typical clover-leaf structures. Phylogenetic analysis showed three mitochondrial genomes in the genus Pseudotolithus formed a clade distinct from the other species in the same family. The mitogenome of P. typus identified in this study exhibited 96.27% and 88.86% identity to T. typus in the Guinean water and P. elongatus, respectively. Additional mitogenome sequences of Pseudotolithus species will provide useful information for their scientific management in western African countries.

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KW - Sciaenidae

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The complete mitochondrial genome of the longneck croaker, pseudotolithus typus Bleeker, 1863 from Sierra Leone

Abstract

Keywords

UN SDGs

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