Next-generation sequencing yields the complete mitochondrial genome of mud spiny lobster, Panulirus polyphagus (Crustacea: Decapoda) from Madura water

S. Andriyono; M. J. Alam; H. Pramono; A. A. Abdillah; H. W. Kim

doi:10.1088/1755-1315/348/1/012020

Next-generation sequencing yields the complete mitochondrial genome of mud spiny lobster, Panulirus polyphagus (Crustacea: Decapoda) from Madura water

S. Andriyono, M. J. Alam, H. Pramono, A. A. Abdillah, H. W. Kim

Research output: Contribution to journal › Conference article › peer-review

Abstract

The circular mitochondrial genome of the mud spiny lobster, Panulirus polyphagus was determined by next-generation sequencing (NGS) platform. The mitochondrial genome of P. polyphagus was 15,707 bp in length, which comprised 13 protein-coding genes, 22 tRNAs, two ribosomal RNAs (12S and 16S). A non-coding putative control region (739 bp) was located between 12S ribosomal RNA and tRNA-Ile. Except for COX1, 13 protein-coding genes initiated with the conventional start codon (ATG). The phylogenetic analysis with the mitogenomes in family Palinuridae showed P. polyphagus was clustered together with four congener species forming a clade, and Panulirus versicolor is closest to P. polyphagus.

Original language	English
Article number	012020
Journal	IOP Conference Series: Earth and Environmental Science
Volume	348
Issue number	1
DOIs	https://doi.org/10.1088/1755-1315/348/1/012020
Publication status	Published - 22 Nov 2019
Event	2nd International Conference on Fisheries, Aquatic and Environmental Sciences 2019, ICFAES 2019, in conjunctions with the 6th Annual Conference of the Asian Society of Ichthyologist 2019, ASI 2019 - Banda Aceh, Aceh Province, Indonesia Duration: 19 Jun 2019 → 20 Jun 2019

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10.1088/1755-1315/348/1/012020

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title = "Next-generation sequencing yields the complete mitochondrial genome of mud spiny lobster, Panulirus polyphagus (Crustacea: Decapoda) from Madura water",

abstract = "The circular mitochondrial genome of the mud spiny lobster, Panulirus polyphagus was determined by next-generation sequencing (NGS) platform. The mitochondrial genome of P. polyphagus was 15,707 bp in length, which comprised 13 protein-coding genes, 22 tRNAs, two ribosomal RNAs (12S and 16S). A non-coding putative control region (739 bp) was located between 12S ribosomal RNA and tRNA-Ile. Except for COX1, 13 protein-coding genes initiated with the conventional start codon (ATG). The phylogenetic analysis with the mitogenomes in family Palinuridae showed P. polyphagus was clustered together with four congener species forming a clade, and Panulirus versicolor is closest to P. polyphagus.",

author = "S. Andriyono and Alam, {M. J.} and H. Pramono and Abdillah, {A. A.} and Kim, {H. W.}",

note = "Publisher Copyright: {\textcopyright} Published under licence by IOP Publishing Ltd.; 2nd International Conference on Fisheries, Aquatic and Environmental Sciences 2019, ICFAES 2019, in conjunctions with the 6th Annual Conference of the Asian Society of Ichthyologist 2019, ASI 2019 ; Conference date: 19-06-2019 Through 20-06-2019",

year = "2019",

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doi = "10.1088/1755-1315/348/1/012020",

language = "English",

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journal = "IOP Conference Series: Earth and Environmental Science",

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Next-generation sequencing yields the complete mitochondrial genome of mud spiny lobster, Panulirus polyphagus (Crustacea : Decapoda) from Madura water. / Andriyono, S.; Alam, M. J.; Pramono, H. et al.

In: IOP Conference Series: Earth and Environmental Science, Vol. 348, No. 1, 012020, 22.11.2019.

Research output: Contribution to journal › Conference article › peer-review

TY - JOUR

T1 - Next-generation sequencing yields the complete mitochondrial genome of mud spiny lobster, Panulirus polyphagus (Crustacea

T2 - 2nd International Conference on Fisheries, Aquatic and Environmental Sciences 2019, ICFAES 2019, in conjunctions with the 6th Annual Conference of the Asian Society of Ichthyologist 2019, ASI 2019

AU - Andriyono, S.

AU - Alam, M. J.

AU - Pramono, H.

AU - Abdillah, A. A.

AU - Kim, H. W.

PY - 2019/11/22

Y1 - 2019/11/22

N2 - The circular mitochondrial genome of the mud spiny lobster, Panulirus polyphagus was determined by next-generation sequencing (NGS) platform. The mitochondrial genome of P. polyphagus was 15,707 bp in length, which comprised 13 protein-coding genes, 22 tRNAs, two ribosomal RNAs (12S and 16S). A non-coding putative control region (739 bp) was located between 12S ribosomal RNA and tRNA-Ile. Except for COX1, 13 protein-coding genes initiated with the conventional start codon (ATG). The phylogenetic analysis with the mitogenomes in family Palinuridae showed P. polyphagus was clustered together with four congener species forming a clade, and Panulirus versicolor is closest to P. polyphagus.

AB - The circular mitochondrial genome of the mud spiny lobster, Panulirus polyphagus was determined by next-generation sequencing (NGS) platform. The mitochondrial genome of P. polyphagus was 15,707 bp in length, which comprised 13 protein-coding genes, 22 tRNAs, two ribosomal RNAs (12S and 16S). A non-coding putative control region (739 bp) was located between 12S ribosomal RNA and tRNA-Ile. Except for COX1, 13 protein-coding genes initiated with the conventional start codon (ATG). The phylogenetic analysis with the mitogenomes in family Palinuridae showed P. polyphagus was clustered together with four congener species forming a clade, and Panulirus versicolor is closest to P. polyphagus.

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VL - 348

JO - IOP Conference Series: Earth and Environmental Science

JF - IOP Conference Series: Earth and Environmental Science

SN - 1755-1307

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Y2 - 19 June 2019 through 20 June 2019

ER -

Next-generation sequencing yields the complete mitochondrial genome of mud spiny lobster, Panulirus polyphagus (Crustacea: Decapoda) from Madura water

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