Molecular characterization of the complete mitochondrial genome of morotoge shrimp Pandalopsis japonica (Decapoda: Pandalidae)

Tae Hoo Yoon; Sapto Andriyono; Hye Eun Kang; Nack keun Kim; Soo Rin Lee; Hyun Woo Kim

doi:10.1080/23802359.2018.1553519

Molecular characterization of the complete mitochondrial genome of morotoge shrimp Pandalopsis japonica (Decapoda: Pandalidae)

Tae Hoo Yoon, Sapto Andriyono, Hye Eun Kang, Nack keun Kim, Soo Rin Lee, Hyun Woo Kim

Research output: Contribution to journal › Article › peer-review

2 Citations (Scopus)

Abstract

The complete mitochondrial genome of the morotoge shrimp, Pandalopsis japonica was determined by the high-throughput sequencing technique. The mitogenome of P. japonica (15,909 bp) encoded the 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes as well as the non-coding control region (D-Loop). The mitochondrial genome of P. japonica showed an identical gene arrangement in its mitochondrial genome to its relative Pandalid shrimps including P. borealis and P. hypsinotus. Among 13 compared mitogenomes within order Suborder Pleocyemata, P. japonica was most closely related to P. hypsinotus with 86% sequence identity clustering together with three other shrimps in family Pandalidae.

Original language	English
Pages (from-to)	545-546
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	4
Issue number	1
DOIs	https://doi.org/10.1080/23802359.2018.1553519
Publication status	Published - 2 Jan 2019

Keywords

East/Japan Sea
High-throughput sequencing
Pandalidae
mitochondrial genome
shrimp

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10.1080/23802359.2018.1553519

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title = "Molecular characterization of the complete mitochondrial genome of morotoge shrimp Pandalopsis japonica (Decapoda: Pandalidae)",

abstract = "The complete mitochondrial genome of the morotoge shrimp, Pandalopsis japonica was determined by the high-throughput sequencing technique. The mitogenome of P. japonica (15,909 bp) encoded the 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes as well as the non-coding control region (D-Loop). The mitochondrial genome of P. japonica showed an identical gene arrangement in its mitochondrial genome to its relative Pandalid shrimps including P. borealis and P. hypsinotus. Among 13 compared mitogenomes within order Suborder Pleocyemata, P. japonica was most closely related to P. hypsinotus with 86% sequence identity clustering together with three other shrimps in family Pandalidae.",

keywords = "East/Japan Sea, High-throughput sequencing, Pandalidae, mitochondrial genome, shrimp",

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AU - Yoon, Tae Hoo

AU - Andriyono, Sapto

AU - Kang, Hye Eun

AU - Kim, Nack keun

AU - Lee, Soo Rin

AU - Kim, Hyun Woo

PY - 2019/1/2

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Molecular characterization of the complete mitochondrial genome of morotoge shrimp Pandalopsis japonica (Decapoda: Pandalidae)

Abstract

Keywords

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