Characterization of complete mitochondrial genome of two-spot swimming crab Charybdis bimaculata (Miers, 1886)

Nack Keun Kim; Sapto Andriyono; Ah Ran Kim; Chung Il Lee; Hyun Woo Kim

doi:10.1080/23802359.2018.1501292

Characterization of complete mitochondrial genome of two-spot swimming crab Charybdis bimaculata (Miers, 1886)

Nack Keun Kim, Sapto Andriyono, Ah Ran Kim, Chung Il Lee, Hyun Woo Kim

Research output: Contribution to journal › Article › peer-review

6 Citations (Scopus)

Abstract

The two-spot swimming crab Charybdis bimaculata (Miers, 1886) is an important decapod species in the benthic ecosystem of Korean waters. In this study, we determined its complete mitochondrial genome by the combination of NGS analysis using MiSeq platform and PCR-based cloning method. The circular mitochondrial genome of C. bimaculata was 15,714 bp in length in which the standard set of 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes were encoded. Phylogenic analysis showed that C.bimaculata is most closely related to Charybdis feriata. The complete mitogenome sequence information of C. bimaculata would provide useful data for the conservation of their population in the Pacific ocean.

Original language	English
Pages (from-to)	902-903
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	3
Issue number	2
DOIs	https://doi.org/10.1080/23802359.2018.1501292
Publication status	Published - 3 Jul 2018

Keywords

Charybdis bimaculata
Next generation sequencing
decapod
mitogenome
phylogeny

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10.1080/23802359.2018.1501292

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title = "Characterization of complete mitochondrial genome of two-spot swimming crab Charybdis bimaculata (Miers, 1886)",

abstract = "The two-spot swimming crab Charybdis bimaculata (Miers, 1886) is an important decapod species in the benthic ecosystem of Korean waters. In this study, we determined its complete mitochondrial genome by the combination of NGS analysis using MiSeq platform and PCR-based cloning method. The circular mitochondrial genome of C. bimaculata was 15,714 bp in length in which the standard set of 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes were encoded. Phylogenic analysis showed that C.bimaculata is most closely related to Charybdis feriata. The complete mitogenome sequence information of C. bimaculata would provide useful data for the conservation of their population in the Pacific ocean.",

keywords = "Charybdis bimaculata, Next generation sequencing, decapod, mitogenome, phylogeny",

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doi = "10.1080/23802359.2018.1501292",

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AU - Kim, Nack Keun

AU - Andriyono, Sapto

AU - Kim, Ah Ran

AU - Lee, Chung Il

AU - Kim, Hyun Woo

PY - 2018/7/3

Y1 - 2018/7/3

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AB - The two-spot swimming crab Charybdis bimaculata (Miers, 1886) is an important decapod species in the benthic ecosystem of Korean waters. In this study, we determined its complete mitochondrial genome by the combination of NGS analysis using MiSeq platform and PCR-based cloning method. The circular mitochondrial genome of C. bimaculata was 15,714 bp in length in which the standard set of 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes were encoded. Phylogenic analysis showed that C.bimaculata is most closely related to Charybdis feriata. The complete mitogenome sequence information of C. bimaculata would provide useful data for the conservation of their population in the Pacific ocean.

KW - Charybdis bimaculata

KW - Next generation sequencing

KW - decapod

KW - mitogenome

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Characterization of complete mitochondrial genome of two-spot swimming crab Charybdis bimaculata (Miers, 1886)

Abstract

Keywords

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